rs218369577 SNP Detail

Summary

• ID
  rs218369577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171076666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGAA TGAATAAGGG
  GACAGGGGCA GGGGAGGTGG GGCTTCTCTG GGAAAGGGAA GGGACTGCTG AGTGTACTCT
  CCTTCCTGGG GATTTCCTGG GGAAACAAGT GGCCATAGGG TGGAGTGAGC AGAAATTGCC
  CCGCTCCTGA ATGCTTCATT TCCTTGCCTT GAGAGAGTGT GCTTTGGTTT CTTAGTCCCC
  Y
  CCAGTTCTGG AAGCAGAAGA GTCATTAGTT CCCTCCTCTA ACACCCACAC ACATACACAT
  ACTGGTCACT ATCCCCATCC CAGGTTCTCT CTCTCTCTCT CTCTCTCTCT CACTCTCTCT
  CTCTCTCTCT GAGATGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTCTCCT CCCCTCCCCC
  CATGGGAAAT GAGGAGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352383316	MGP_WTSI_1_173179228	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218369577					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352383316	MGP_WTSI_1_173179228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171076666 () rs orientation: forward

Symbol	Name	Function Class
Adamts4	ADAM metallopeptidase with thrombospondin type 1 motif 4	1324 bp upstream
Cpgi1016	CpG island 1016	1577 bp distal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	650 bp downstream
Rr423259	regulatory region 423259	1485 bp distal
Rr423260	regulatory region 423260	1937 bp distal
Rr423261	regulatory region 423261	1410 bp distal
Rr423262	regulatory region 423262	within coordinates
Rr423263	regulatory region 423263	732 bp proximal
Rr423264	regulatory region 423264	1012 bp proximal
Rr423265	regulatory region 423265	1337 bp proximal
Tssr10000	transcription start site region 10000	1720 bp downstream
Tssr10001	transcription start site region 10001	1319 bp upstream
Tssr10002	transcription start site region 10002	1458 bp upstream
Tssr15023	transcription start site region 15023	1976 bp upstream