rs218373246 SNP Detail

Summary

• ID
  rs218373246
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48049146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CAGGTAGGTC TGAAACCCTT
  W
  ATCCTCCCGA GCAAGGGAAA TGGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321109596	CHEV_4_48062018	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218373246					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48049146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14279	CpG island 14279	415 bp distal
Cpgi14280	CpG island 14280	52 bp distal
Gm68858	predicted gene, 68858	1948 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	1959 bp distal
Rr591930	regulatory region 591930	1458 bp distal
Rr591931	regulatory region 591931	1100 bp distal
Rr591932	regulatory region 591932	within coordinates
Tssr37195	transcription start site region 37195	1888 bp downstream
Tssr37196	transcription start site region 37196	1867 bp downstream
Tssr37197	transcription start site region 37197	1836 bp downstream
Tssr37198	transcription start site region 37198	1819 bp downstream
Tssr37199	transcription start site region 37199	1769 bp downstream
Tssr37200	transcription start site region 37200	1757 bp downstream
Tssr37201	transcription start site region 37201	1393 bp downstream
Tssr37202	transcription start site region 37202	1258 bp downstream
Tssr37203	transcription start site region 37203	1230 bp downstream
Tssr37204	transcription start site region 37204	1057 bp downstream
Tssr37205	transcription start site region 37205	1027 bp downstream
Tssr37206	transcription start site region 37206	863 bp downstream
Tssr37207	transcription start site region 37207	83 bp downstream
Tssr37208	transcription start site region 37208	54 bp downstream
Tssr37209	transcription start site region 37209	780 bp upstream
Tssr37210	transcription start site region 37210	1631 bp upstream
Tssr41634	transcription start site region 41634	1996 bp upstream
Tssr41635	transcription start site region 41635	83 bp upstream
Tssr41636	transcription start site region 41636	39 bp upstream