rs218380552 SNP Detail

Summary

• ID
  rs218380552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143652819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCGGCC CGCAGCAGGC
  CTGCAGTGAC CCACCTTTAC CTGGAAGGTG ATGCTCAGGA CCCGCGGCGC CTACAGAAAG
  CCTGCGTCGC ACCAGGAATA GGAGGCGGCC CGAAAGGGCG AGGACAGCTC CAGGTTCGGG
  TCGGAGCGAG CCCCGCCCCG CCCCGTCTCG AGCCCCGCCC CTTCCATCGC CCCGCCCCAG
  Y
  TCTGGGGTGC CAAGGGTCCC GGATGTGCCT CCCTCCGGCG CTCCGAGGCC CCGCTACTTC
  TCCGGCCCGG CAGAGGGCGC TACGGATCCT GAGAGGCAGG AGAGGCGTTT CGACGTCTCC
  CGGGTGGCTA GAGCGTCCTT CTGTGCTCCG GCGCGCGGCA GGTGACGGCG CCCGGAGGCT
  GTCGGGAAGT AGGCGGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351733316	MGP_WTSI_1_145624211	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218380552					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351733316	MGP_WTSI_1_145624211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143652819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	within coordinates
Gm25663	predicted gene, 25663	1847 bp upstream
Gm29170	predicted gene 29170	561 bp upstream
Ro60	Ro60, Y RNA binding protein	25 bp upstream
Rr396352	regulatory region 396352	within coordinates
Rr396353	regulatory region 396353	986 bp upstream
Rr419943	regulatory region 419943	24 bp distal
Rr419944	regulatory region 419944	within coordinates
Rr419945	regulatory region 419945	63 bp proximal
Rr419946	regulatory region 419946	572 bp proximal
Tssr9196	transcription start site region 9196	182 bp upstream
Tssr9197	transcription start site region 9197	251 bp upstream
Tssr14094	transcription start site region 14094	42 bp upstream
Uchl5	ubiquitin carboxyl-terminal esterase L5	191 bp upstream