rs218384449 SNP Detail

Summary

• ID
  rs218384449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCGGGC CTCCCCTGAG
  CCCGTCTGTG GTGCCAGCCC TTAGTGCATT CAGGCTTAGG CTCCCAGGCA GGGACACTAC
  CCCCGCGCCT CTGGAGGACA TGCTATCCTC TCACTCTGTC CACTGGTATC TCAACACCCC
  CATCTGCCCA GTAAAGGTCT TTCTGCAGCA GTTCAGCCTA CTTGGAATTT TCTCAATGGT
  R
  GCTCCCTTGC GAGGTGGGGG ACTGTGGCTG GAGACAAGGG AGGGTGAAGG AAGGGAGGGA
  GGTACACAGG GTGGACCTCT GCAGTCCACA CTGCAGCCCT GCTCAGCTTC TAGAATCTGT
  GACCCAGTTC CCATCGGCTG GTCCTCACCC ACCTTCCCCA GGGCATTGAG GGCTGAGAGA
  GGGTGTCGTT TCTGAAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428918	MGP_WTSI_11_54723910	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218384449					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428918	MGP_WTSI_11_54723910	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801234 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	21 bp downstream
Tnip1	TNFAIP3 interacting protein 1	377 bp downstream
Tssr3502	transcription start site region 3502	764 bp upstream
Tssr3503	transcription start site region 3503	292 bp downstream
Tssr101561	transcription start site region 101561	1851 bp downstream
Tssr101562	transcription start site region 101562	1804 bp downstream
Tssr101563	transcription start site region 101563	1792 bp downstream
Tssr101564	transcription start site region 101564	1771 bp downstream
Tssr101565	transcription start site region 101565	1341 bp downstream
Tssr101566	transcription start site region 101566	1295 bp downstream
Tssr101567	transcription start site region 101567	932 bp downstream
Tssr101568	transcription start site region 101568	858 bp downstream
Tssr101569	transcription start site region 101569	775 bp downstream
Tssr101570	transcription start site region 101570	724 bp downstream
Tssr101571	transcription start site region 101571	648 bp downstream
Tssr101572	transcription start site region 101572	604 bp downstream
Tssr101573	transcription start site region 101573	577 bp downstream
Tssr101574	transcription start site region 101574	552 bp downstream
Tssr101575	transcription start site region 101575	505 bp downstream
Tssr101576	transcription start site region 101576	484 bp downstream
Tssr101577	transcription start site region 101577	462 bp downstream
Tssr101578	transcription start site region 101578	377 bp downstream
Tssr108007	transcription start site region 108007	1834 bp upstream
Tssr108008	transcription start site region 108008	1773 bp upstream
Tssr108009	transcription start site region 108009	1757 bp upstream
Tssr108010	transcription start site region 108010	1337 bp upstream
Tssr108011	transcription start site region 108011	721 bp upstream
Tssr108012	transcription start site region 108012	640 bp upstream
Tssr108013	transcription start site region 108013	620 bp upstream
Tssr108014	transcription start site region 108014	605 bp upstream
Tssr108015	transcription start site region 108015	524 bp upstream
Tssr108016	transcription start site region 108016	462 bp upstream
Tssr108017	transcription start site region 108017	421 bp upstream
Tssr108018	transcription start site region 108018	400 bp upstream
Tssr108019	transcription start site region 108019	331 bp upstream
Tssr108020	transcription start site region 108020	312 bp upstream
Tssr108021	transcription start site region 108021	295 bp upstream
Tssr108022	transcription start site region 108022	252 bp upstream
Tssr108023	transcription start site region 108023	28 bp upstream