rs218385743 SNP Detail

Summary

• ID
  rs218385743
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122342269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAC AAACAAAAAA
  GCCCTCTCTT TCCTCAGCTT CTCCGAATTG TCAAATGCCG TGTGGAACAT AGAAAAAAAA
  CATATTCCTC AGGTTTTGCT CCAGTCAGAG TTATCAGTAG TCTGAAAAAA GTTGCGTTTT
  TCCCTTTAAT CTAGTCGGGA AGAGCCTCAC CAACCAGGAG CTGGCTACCC AGAGTTGGAA
  M
  GCTTCGCCCC GCCCCCGCCC ACCCCGCCCC CTCCCGCCAT CAGGTAACCT AGGGAACCGC
  AGGTGAGGCG TTACCCAGAA GAGGCCGGAT CCGGAAGTAG GGGTCGCCCC GCCCACCAGC
  CAAGAAGCGG CCCAGCACGG TGACGTGTCG TTGTAGGAGT TGGCTTTACT CGCCGTGCGT
  ACACCCAGTT GGAGCTCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392814870	MGP_WTSI_14_122504079	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218385743					SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392814870	MGP_WTSI_14_122504079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122342269 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	within coordinates
Cpgi6887	CpG island 6887	46 bp proximal
Cpgi6888	CpG island 6888	1889 bp proximal
Gm56752	predicted gene, 56752	70 bp upstream
Rr296792	regulatory region 296792	within coordinates
Rr404313	regulatory region 404313	within coordinates
Tssr127313	transcription start site region 127313	144 bp upstream
Tssr127314	transcription start site region 127314	266 bp upstream
Tssr130316	transcription start site region 130316	977 bp downstream