About   Help   FAQ
rs218385743 SNP Detail
Summary
  • ID
    rs218385743
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr14:122342269 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAAAAAAAC AAACAAAAAA
    GCCCTCTCTT TCCTCAGCTT CTCCGAATTG TCAAATGCCG TGTGGAACAT AGAAAAAAAA
    CATATTCCTC AGGTTTTGCT CCAGTCAGAG TTATCAGTAG TCTGAAAAAA GTTGCGTTTT
    TCCCTTTAAT CTAGTCGGGA AGAGCCTCAC CAACCAGGAG CTGGCTACCC AGAGTTGGAA
    M
    GCTTCGCCCC GCCCCCGCCC ACCCCGCCCC CTCCCGCCAT CAGGTAACCT AGGGAACCGC
    AGGTGAGGCG TTACCCAGAA GAGGCCGGAT CCGGAAGTAG GGGTCGCCCC GCCCACCAGC
    CAAGAAGCGG CCCAGCACGG TGACGTGTCG TTGTAGGAGT TGGCTTTACT CGCCGTGCGT
    ACACCCAGTT GGAGCTCTGA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392814870 MGP_WTSI_14_122504079 EVA_MGPV3 EVA_MGPV3 f SNP A A A A C A A A A A A A A A A A C A A C A A A C A A A A A A A A A A C A A C C A A C A A A C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218385743 SNP A A A A C A A A A A A A A A A A C A A C A A A C A A A A A A A A A A C A A C C A A C A A A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss392814870 MGP_WTSI_14_122504079 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:122342269 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330035P11Rik RIKEN cDNA A330035P11 gene within coordinates
Cpgi6887 CpG island 6887 46 bp proximal
Cpgi6888 CpG island 6888 1889 bp proximal
Gm56752 predicted gene, 56752 70 bp upstream
Rr296792 regulatory region 296792 within coordinates
Rr404313 regulatory region 404313 within coordinates
Tssr127313 transcription start site region 127313 144 bp upstream
Tssr127314 transcription start site region 127314 266 bp upstream
Tssr130316 transcription start site region 130316 977 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory