rs218390812 SNP Detail

Summary

• ID
  rs218390812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124747850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGGCAG CCGCGAGCCC
  TCCGTCCGCT GCCCACTTCC GCCGAGCGCC CTCGTGAGCT CGCAGTTGGC TCCGCGCGAG
  GGCGCCCGGC GGGGCCGCGG GGTCTCCGGG CGCGTGCAGC CGGGGCCGCC ACGTGCGGGG
  TCGCTCGGAC CCGCGCGCGC GCGAGCAGGG CCGGGACTGC GCAGGGGCGG GCGCGCGCGC
  R
  CGCGCTCTCC CGCCCGAGGC CCCTCCCCCG CGTCCCCTCC CCCCCCCCGC CCTGTCCCGC
  GCCCCGCCCG CACTCACTGA ACATCCCAGG CGGCTCCCGC TGCCCCGCCG CCGCCCCGGC
  ACCGGCTGCT TCCGTATCGG TTGCCCGCCG TAGGACTCCG TACGACGACC GGCTAGCCGG
  GTCCCCGCGC CCTACGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss376355936	MGP_WTSI_8_126545011	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs218390812					SNP	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376355936	MGP_WTSI_8_126545011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124747850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	within coordinates
Mir1967	microRNA 1967	1530 bp upstream
Taf5l	TATA-box binding protein associated factor 5 like	within coordinates
Tssr80012	transcription start site region 80012	44 bp upstream
Tssr80013	transcription start site region 80013	341 bp upstream
Tssr80014	transcription start site region 80014	408 bp upstream
Tssr80015	transcription start site region 80015	457 bp upstream
Tssr83422	transcription start site region 83422	156 bp upstream
Tssr83423	transcription start site region 83423	5 bp upstream
Tssr83424	transcription start site region 83424	248 bp downstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	397 bp upstream