rs218396365 SNP Detail

Summary

• ID
  rs218396365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144939901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTAGCA TTCACGAGGC
  CCCTGGGTTC AAGCCCCAGC ACCACACAAA TCATAGGATG GACAGACTTG TCATCCCAAT
  ACTTGGGAAG TAGAGGCAAG AGGATACAAA AGTCAAGGTC ATCCTTTGGC AAGGTGGTTG
  TCAGTCTTAG ATGGAAAAAT AAGATTCGAA AACATAATGT AACGCCAAGG GTCCTGACAC
  R
  GTTGCACATG CCTATAACTC AGCACTCTCG AAACTGAGGC AGGAGAATAT CCAAGTTCAA
  GGTGCCTGGA GGATGCAGCC AGACTGGGTA TACAGCAAAA CTCCATGTAT GAACAAACAG
  ATAAGCAAAA ATAATGATTA AAAGATAAAA TCAATTTATT TAAAAAAATT TATTACATTT
  ATGGTATGTG AGTGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595742	MGP_WTSI_4_144803234	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218396365					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595742	MGP_WTSI_4_144803234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144939901 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	900 bp proximal
Rr103536	regulatory region 103536	102 bp distal
Rr103537	regulatory region 103537	354 bp proximal
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	132 bp downstream
Tssr40194	transcription start site region 40194	598 bp upstream
Tssr40195	transcription start site region 40195	950 bp upstream
Tssr44484	transcription start site region 44484	546 bp upstream
Tssr44485	transcription start site region 44485	480 bp upstream
Tssr44486	transcription start site region 44486	325 bp downstream
Tssr44487	transcription start site region 44487	379 bp downstream
Tssr44488	transcription start site region 44488	482 bp downstream
Tssr44489	transcription start site region 44489	574 bp downstream
Tssr44490	transcription start site region 44490	867 bp downstream
Tssr44491	transcription start site region 44491	1034 bp downstream
Tssr44492	transcription start site region 44492	1259 bp downstream
Tssr44493	transcription start site region 44493	1420 bp downstream
Tssr44494	transcription start site region 44494	1654 bp downstream
Tssr44495	transcription start site region 44495	1715 bp downstream
Tssr44496	transcription start site region 44496	1784 bp downstream
Tssr44497	transcription start site region 44497	1907 bp downstream