rs218412240 SNP Detail

Summary

• ID
  rs218412240
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23791272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAATGTA AAATAAAATA
  GGTTTGTTTT TTTAAGAAAT GATATTTGTA TTAGTACCTC CTCCGGCCCA CACACACACA
  CGCCCATACA TGAGACTTTG TGCCCTTTAA CATTTTGTAA CAGTCAGCAG CATAACCAGT
  TTTCTATTGG GGTTTTTGTT GTGCCTGTTT TTCTTTATTT TTTTTATTTT TTTTTTTTTT
  K
  GTGGTGTTGG GACCAAACGC TTGTACATGC TAGGAAAATT CTCTACCACT GAGATATATC
  CCTAGCCCCT CTCTCTATAA AGTCTTTTCC ATGTTAATTT AGATGTTGCT CGGACTCCCT
  ATTTTTCTCA TTAAAATCAG ATTAGAAACT ATTGAAAGAG GGGTATGGAA TACAGCCCAG
  TGGTTGAGTA CCAACCTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss364267651	MGP_WTSI_5_23092092	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	G	T	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs218412240					SNP	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	G	T	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364267651	MGP_WTSI_5_23092092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23791272 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	529 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	520 bp upstream
Tssr50280	transcription start site region 50280	346 bp downstream