rs218418158 SNP Detail

Summary

• ID
  rs218418158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33198846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTACCACC CATATCCGGT
  TTTCTTTTCC TTTATTGGAG GGGTCCAAAG TCTCCTCTAT GGCCTTTGCA TCTGCTCCTG
  CCTTGCCTAA TAAGTTTCTG CCTTGATTTC CTCAATGACA GACTTGGTCT GGGACATGTA
  AATCAAACAA CCCTTTTCTC CCCAAGTCTT GGTGTTTATC AGTGTTAGAA AAGTAAACAA
  R
  AACGGAAGGC AAATATAGAT ACCCTGTTGC GGTAAACATT TAGAAGCCTC TCTATGCTCC
  TGGCAGATGC ATGCTGCTCT GCACCCGCCC CGCCGGCGAG CTCTGGATTC ATGAATGAAA
  GACACACACG CTGCATTACT TTCAGTATGC CTTACTAGTT TAATGGCTGG GCACTTCCGG
  ACGTCCCCCA AGCTAGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320699052	CHEV_3_33043619	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218418158					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33198846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13064	CpG island 13064	1070 bp distal
Pex5l	peroxisomal biogenesis factor 5-like	1450 bp upstream
Rr575054	regulatory region 575054	1626 bp distal
Rr575055	regulatory region 575055	1125 bp distal
Tssr32953	transcription start site region 32953	1697 bp upstream
Tssr32954	transcription start site region 32954	1673 bp upstream
Tssr32955	transcription start site region 32955	1611 bp upstream
Tssr32956	transcription start site region 32956	1538 bp upstream
Tssr32957	transcription start site region 32957	1511 bp upstream
Tssr32958	transcription start site region 32958	1477 bp upstream
Tssr32959	transcription start site region 32959	1431 bp upstream
Tssr32960	transcription start site region 32960	1405 bp upstream
Tssr32961	transcription start site region 32961	1385 bp upstream