rs218418736 SNP Detail

Summary

• ID
  rs218418736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCACATC TACAAATTAA
  CTCAGCCTGT TTTACTATGG AAGAAACTAC AAGTCCTTGT AGGAGCAGAA AGGTGTAACA
  CCTCTCCACA CCCACTGTAA GGGCCGCAGC CAACACTCCC ATATATCAGG ATGCAAAAGA
  AAAAGCATGA TAAATGAAGC CTGAAAGAAT TTGAGAAACC TCTTTTCGTT CAGGTAATAA
  Y
  GTGAAGGTGA CAGGCTGAGG GGAAAGGTCT CGCAAAGCCG GCATGTCCAC ATTCTTGGCC
  TCTCCCTAAC ATTCTTTCTT CTGGAGGTTT TTGAGGTAGA GTGTCCTGGA ATGAGGGGCT
  TCAAAGGAGG AGGGGGAAGG GAGAAAAGAT CGAGCTTTCC ATGTTTTATA GTTTAGTCTG
  AGGGAGATGC ATTCTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367532661	MGP_WTSI_6_17642783	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218418736					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367532661	MGP_WTSI_6_17642783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	892 bp proximal
Gm55211	predicted gene, 55211	643 bp upstream
Gm55212	predicted gene, 55212	1154 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	794 bp proximal
Rr626835	regulatory region 626835	1761 bp proximal
Rr626836	regulatory region 626836	1932 bp proximal
St7	suppression of tumorigenicity 7	797 bp upstream
Tssr55085	transcription start site region 55085	824 bp upstream
Tssr55086	transcription start site region 55086	1122 bp upstream
Tssr55087	transcription start site region 55087	1182 bp upstream
Tssr55088	transcription start site region 55088	1222 bp upstream
Tssr55089	transcription start site region 55089	1268 bp upstream
Tssr55090	transcription start site region 55090	1387 bp upstream
Tssr59909	transcription start site region 59909	1912 bp downstream