rs218420477 SNP Detail

Summary

• ID
  rs218420477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136377548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGCCGCC CCGGGATTTC
  CCCGCAGGCC TGGAGCGACG CGAGCGGTGG CGATCCTCTG TCGACCTCCC TTGCCACCCA
  CGGCTGACTG CCGCCGACCT GTCATTGCTC TTAAAGGGTT CCCCGCTGGT GCACACCTTT
  AGGGTGGGAA GCTCACCGTG CTCCCTTCCC CCAAGCTCCT AGCACCCCCT TGGTTACGGG
  Y
  TATTTGGTTG TCTTTATTGC TAGGGGTGAT TTGTATGTGT ATAACTGGCA GGGATGGCTC
  TGGGTTGCTG GCTAGGAGAA GCCAGGGGGA TTCGTGGGGT GAGGAAGGGG ACAACGTGGT
  TGCCCTTTCT ATCCCCACCA TCCTCACTGT ATTCCAATGT GGAACGGGGA AGAGGAACTG
  CAGATTCGAA AGGATTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865514	MGP_WTSI_3_136334751	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218420477					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865514	MGP_WTSI_3_136334751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136377548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	within coordinates
Gm56786	predicted gene, 56786	1843 bp upstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398056	regulatory region 398056	1637 bp downstream
Rr398057	regulatory region 398057	685 bp downstream
Rr585834	regulatory region 585834	1875 bp distal
Rr585836	regulatory region 585836	1653 bp distal
Rr585837	regulatory region 585837	1007 bp distal
Rr585838	regulatory region 585838	within coordinates
Tssr31863	transcription start site region 31863	1601 bp downstream
Tssr31864	transcription start site region 31864	1580 bp downstream
Tssr31865	transcription start site region 31865	1558 bp downstream
Tssr31866	transcription start site region 31866	1523 bp downstream
Tssr31867	transcription start site region 31867	1480 bp downstream
Tssr31868	transcription start site region 31868	1361 bp downstream
Tssr31869	transcription start site region 31869	1348 bp downstream
Tssr31870	transcription start site region 31870	1313 bp downstream
Tssr31871	transcription start site region 31871	1260 bp downstream
Tssr31872	transcription start site region 31872	1204 bp downstream
Tssr31873	transcription start site region 31873	1185 bp downstream
Tssr31874	transcription start site region 31874	1059 bp downstream
Tssr31875	transcription start site region 31875	963 bp downstream
Tssr31876	transcription start site region 31876	913 bp downstream
Tssr31877	transcription start site region 31877	1309 bp upstream
Tssr35849	transcription start site region 35849	1850 bp upstream