rs218421714 SNP Detail

Summary

• ID
  rs218421714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31274856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTTACA GCACAAGTCT
  GTCCAACTCT GCCACTCTCT CATTCCCTGC TCAGGCATGA AGGGGATGCC AGGAGTAAAC
  AATGGAAAAG ATACTTGTTT GTAGGTAGGA AGCACCCATC ACTTGTGGGG TCCATTGTGG
  CCAGGGGGAC TACTACCCCA TGGACACATA TATGAGTGGG AACCCTTTCA GTGGCCCAAG
  Y
  CACACCAGTG AGAACCCCAC ACATGGCTGT CTCTGTCTGA GCCCTGTGCA TTCTCAGGAA
  CCCAGAAAGC CCTGCCTCCC ATCTGAAGCT CCAGTACACA GGCTGCATGG AGGCTGCTGG
  GGGCTGGAAG CTCATTGGCC TACTTTTGAA TTAAAGGTTC ATCAAAGGAA TGTGAATCAA
  AGGGGGCGTG GAAATGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325358440	CHEV_17_31192827	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218421714					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31274856 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	1812 bp upstream
Cpgi8940	CpG island 8940	1383 bp proximal
Rr525355	regulatory region 525355	1315 bp proximal
Rr525356	regulatory region 525356	1856 bp proximal
Tssr143637	transcription start site region 143637	1804 bp upstream
Tssr143638	transcription start site region 143638	1822 bp upstream
Tssr143639	transcription start site region 143639	1837 bp upstream
Tssr143640	transcription start site region 143640	1858 bp upstream
Tssr143641	transcription start site region 143641	1886 bp upstream