rs218428572 SNP Detail

Summary

• ID
  rs218428572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43116606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGGAGCT AATGATTATG AGTCTCCCAG TCTAGAGTCC TATGACATGT GACCAAAAGC
  GAATGAATGA ATGGGGTGAG TGAGATGCTC AGAGGGGAAA GGTACTTGCC ACCAAGCCTG
  ATGGCCTAGG TTTGATCCTC AGAACCCTGG TAGTGAAAGA CTAGAACCAA CTCCCAGAAA
  Y
  CAACTCCCAT GTCCTCTGAT CACTGCATAC TTTCAGTGGC AGATGCACAC ACAATAATGA
  AATGTTTTAA AAAGCTGTCA AGAAAATGAA TGAATGAATG AATGAATGAA TGAATGAACA
  GATCTTCATC TGGTCACAGA GGAGGGGGCA TTTGCTACTT TTTGCCTTAA CAAAGGACTC
  AGGACTTGGC TATTCATATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322197036	CHEV_7_50722552	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218428572					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43116606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	1171 bp distal
Cpgi18933	CpG island 18933	367 bp distal
Gm39000	predicted gene, 39000	815 bp upstream
Rr400282	regulatory region 400282	1151 bp downstream
Rr645967	regulatory region 645967	1653 bp distal
Rr645968	regulatory region 645968	1080 bp distal
Rr645969	regulatory region 645969	1583 bp distal
Rr645970	regulatory region 645970	891 bp distal
Rr645971	regulatory region 645971	584 bp distal
Tssr66010	transcription start site region 66010	1161 bp downstream
Tssr72135	transcription start site region 72135	1592 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates