rs218432464 SNP Detail

Summary

• ID
  rs218432464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAATCCG TCCATGCACT
  CCCAACATTG TCTGTGACAA TGAGCGCCTT GTTTCCGTGG CGCCTAGATC TCTGTCCACG
  CGGGTGAGTG CGGGGCCGCC ACCTCGGGCG TGAGAGAGGC TGCAGCTCCG GGGTGCGCCA
  GGGGGTGCGT GCGCTTTGCG CGGGTGACTT TGGAGCACCA GGAGGGGGAG ACTCGGGGCC
  R
  CTGATCTCCC TCTGCGCTGG CTTCAGACTC CAGAACTGGA GGAGGAAGAG AAAGCGCATA
  GCTGGGGAGA GGGAAACTTC TCCACCTAGA AAGTTTCACC TTGCCGAGGG CGGGGGGTGG
  GGCGGGGCTT GAGGAAGTGC GACCCCCCGG GCTAAGCGTA CTGGCTGCGG GAAGGGCGGG
  GACGCCAACC CCCCCCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526404	MGP_WTSI_6_17413544	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218432464					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526404	MGP_WTSI_6_17413544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	within coordinates
Rr626800	regulatory region 626800	49 bp distal
Rr626801	regulatory region 626801	6 bp distal
Rr626802	regulatory region 626802	505 bp proximal
Tssr55050	transcription start site region 55050	102 bp downstream
Tssr55051	transcription start site region 55051	11 bp upstream
Tssr55052	transcription start site region 55052	205 bp upstream
Tssr55053	transcription start site region 55053	282 bp upstream
Tssr55054	transcription start site region 55054	341 bp upstream
Tssr55055	transcription start site region 55055	357 bp upstream
Tssr55056	transcription start site region 55056	383 bp upstream
Tssr55057	transcription start site region 55057	548 bp upstream
Tssr55058	transcription start site region 55058	588 bp upstream
Tssr55059	transcription start site region 55059	627 bp upstream