rs218434939 SNP Detail

Summary

• ID
  rs218434939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCTTC TCACCCTGAG
  AGCCACCACC TAGATCCATA TCGGCAGCAT GACCTCTACT CTTGCCTGGC CACGTTGGGG
  TGAGGAACAG TCCTGTCTAG CAAACCTCTG ACACCAGGGA CTTTGCAAGA TGCACGAGCC
  CACTCTACCC TCCAAGCCCG GGCTTTAAGC CCAGGGCGCA AGGAGACATC CCAACCCAAC
  S
  AGGATCCATG TCAGTGAGGT CCTTTCTGTA GAGGTGCCAG TAAATGCAGT TGGGGACAGT
  TGAGCCAAGG GGTCCGGATC GGAAAGTTGA GGTTCAGACC CCCAAACGGG TCGACGGCTT
  TGGAAGAAGC TGAGCCGATC AGGAGGCAGG CAGGCAACAG CAGTGAAATG AACCTCGTTA
  TACAGATGCC TGGGGGATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390637185	MGP_WTSI_14_29317412	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218434939					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390637185	MGP_WTSI_14_29317412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	430 bp proximal
Rr406804	regulatory region 406804	1691 bp distal
Tssr124778	transcription start site region 124778	339 bp upstream
Tssr124779	transcription start site region 124779	408 bp upstream
Tssr124780	transcription start site region 124780	452 bp upstream
Tssr124781	transcription start site region 124781	510 bp upstream
Tssr124782	transcription start site region 124782	570 bp upstream
Tssr124783	transcription start site region 124783	1237 bp upstream
Tssr124784	transcription start site region 124784	1269 bp upstream
Tssr124785	transcription start site region 124785	1316 bp upstream
Tssr124786	transcription start site region 124786	1380 bp upstream
Tssr124787	transcription start site region 124787	1533 bp upstream
Tssr124788	transcription start site region 124788	1555 bp upstream
Tssr124789	transcription start site region 124789	1591 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	524 bp upstream