rs218442502 SNP Detail

Summary

• ID
  rs218442502
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16589549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGGCGG AAGTCAGGCC
  TGGCGGCGCC GCTCGCACCA GGATTTACCT GCGGGCCACG GACGCCCGGC AGACGGCTCC
  ACATGGGCGA GCGCTCCAGA GCTCCGCCGA CGCCGCCTGC TCCCTCCTCG GCTCCCGCCC
  CCCGCCTCCG CCTGCCGCCC TGCGCTCCCG CCGCGCCCTC CCGGGCCCGC GCCGCGCGCC
  S
  CCGCCTGCGC CGCCGCGCCC GCGCCACGCC GCGCGCCCCC GCGCCAGCTC TCTCTCGCGC
  TCTCTCTCTC CAGCTCGCTC TGTCTCTCTG TCTCTCTCCC CTTTCTTTCT CTGTCTCTCT
  CCTCTCTCTG TCTGTCTCTC TCTCTCTGTG TCTCTCCCCC CTCTCTTTCT CTGTCTCTCT
  CTCTCCTCTC TCTGTGTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss348752882	MGP_WTSI_1_16509406	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs218442502					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348752882	MGP_WTSI_1_16509406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16589549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi55	CpG island 55	within coordinates
Rr28890	regulatory region 28890	within coordinates
Stau2	staufen double-stranded RNA binding protein 2	within coordinates
Tssr11038	transcription start site region 11038	65 bp upstream
Tssr11039	transcription start site region 11039	within coordinates
Tssr11040	transcription start site region 11040	698 bp downstream
Tssr11041	transcription start site region 11041	742 bp downstream
Tssr11042	transcription start site region 11042	781 bp downstream