rs218450939 SNP Detail

Summary

• ID
  rs218450939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112416633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGTGTGC TCTGTACAGC
  ATGGGCATGG TCCGGCCTGG GGTCCCCTTC TCTATCAGGG TGGACAGAAT TGGGTGGGAT
  CCAGCTATTC CTGTTGAGAA ACCAGCTAAT GACAGACAGG GGGTCAGAGG ACTTGTGTTC
  GGGCAAGGGC AGGACTTAGG GTGAAACGCC CACTGTGCCT CTCCTTGCGG AGGATGTAGA
  Y
  GGTGGGGATC CTACTCCTTC CACTTCTGAT GAGGGCTCAC TTCATTTGAT GGGTGAGAGC
  AGCACAAAGG TAAACTGAGG TCCACAATGG CTCAGCTTTT GGGTTACCTG ACACTGGATA
  GTGCTTACAG GAGCCACAGA GACTCACTGT AATAGAAGGG ACACCCAGGA GCTCGAGTCT
  CATGTATTGG ATTCTGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277542	MGP_WTSI_5_112697787	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	T	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218450939					SNP	T	T	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	T	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277542	MGP_WTSI_5_112697787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112416633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	505 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Gm46941	predicted gene, 46941	1954 bp downstream
Rr617313	regulatory region 617313	1797 bp proximal
Tssr47978	transcription start site region 47978	1242 bp downstream
Tssr47979	transcription start site region 47979	1210 bp downstream
Tssr47980	transcription start site region 47980	543 bp upstream
Tssr47981	transcription start site region 47981	690 bp upstream
Tssr47982	transcription start site region 47982	707 bp upstream
Tssr47983	transcription start site region 47983	721 bp upstream
Tssr47984	transcription start site region 47984	730 bp upstream
Tssr47985	transcription start site region 47985	741 bp upstream
Tssr52559	transcription start site region 52559	1405 bp upstream
Tssr52560	transcription start site region 52560	1366 bp upstream
Tssr52561	transcription start site region 52561	718 bp downstream
Tssr52562	transcription start site region 52562	762 bp downstream