rs218460814 SNP Detail

Summary

• ID
  rs218460814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAACAAA CACGTATTTG
  GGCCCAAAAA TTCTACACTA TCAAAACTTA TACCGAGTTA ATGAAACATC ACTTTCTTCC
  TCTGCCCACA TCCACCCTTA AGTCTGTTTA GTTGTTTATC TGTTTACTAC CAGGACTAGG
  GATTAAATAT CAGGCCTTAG ACATGCTAAG AAAATGTCTA ACACAGAGCT CCATCCTCAG
  R
  CCACGTTCTA CACTTTATTT TAAGACCAGC TCTCACTACA CTGGCCTTGA ATTCACTCTA
  GTCTTAGTGG GTCTCTTAAG TATTGATTCT CCTGCCTCAG GTGGTCTAAA CATCCTGGTT
  GGATGTTTCA TCAAGTAAAA GGGGACTCTT AAAAATAGTC ACCCCCTTCT CACTAACTGT
  GGGATAGGTG ATGGAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230123	MGP_WTSI_6_4488308	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218460814					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230123	MGP_WTSI_6_4488308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538308 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	328 bp downstream
Tssr1770	transcription start site region 1770	347 bp upstream
Tssr54726	transcription start site region 54726	510 bp downstream
Tssr54727	transcription start site region 54727	429 bp downstream
Tssr54728	transcription start site region 54728	352 bp downstream
Tssr54729	transcription start site region 54729	298 bp downstream
Tssr54730	transcription start site region 54730	308 bp upstream
Tssr54731	transcription start site region 54731	363 bp upstream
Tssr54732	transcription start site region 54732	383 bp upstream
Tssr54733	transcription start site region 54733	1159 bp upstream
Tssr54734	transcription start site region 54734	1170 bp upstream
Tssr54735	transcription start site region 54735	1184 bp upstream
Tssr54736	transcription start site region 54736	1208 bp upstream
Tssr54737	transcription start site region 54737	1230 bp upstream
Tssr54738	transcription start site region 54738	1268 bp upstream
Tssr54739	transcription start site region 54739	1283 bp upstream
Tssr54740	transcription start site region 54740	1347 bp upstream
Tssr54741	transcription start site region 54741	1698 bp upstream