rs218462001 SNP Detail

Summary

• ID
  rs218462001
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4167516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGTCCAGG AATTCTCTTT CGTTTGCCCT
  CCTCCCTCAG ACCCAAGAGA CTAGCCCCCA GAATCTGGCA ACCCCCGGAA GTTCCTTCTT
  ACCTGCACCA GGAATAAGCT TCAGCCCCTC TCGGGGGCCA TGGCAGCCTA CCAACCAAGC
  G
  CCGAGTCAAC GCCCAGTCAG CCAAGCTGGT CTCTTGTCCC GGGTTGAGAG GGTTAAGCCA
  TAGGCCCCTC CCAGCCTTCC TTAGTCCCTA AAAGTTTGCC TCTAGGATTT AAAGGACTAG
  AAAGCCTTGA TGGTAGAAAA GCTAAAGGCC                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093639	CHEV_7_4116119	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218462001					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4167516 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	within coordinates
Rr641923	regulatory region 641923	655 bp distal
Rr641924	regulatory region 641924	within coordinates
Rr641925	regulatory region 641925	333 bp proximal
Rr641926	regulatory region 641926	1834 bp proximal
Tssr70452	transcription start site region 70452	251 bp upstream
Tssr70453	transcription start site region 70453	within coordinates
Tssr70454	transcription start site region 70454	144 bp downstream
Tssr70455	transcription start site region 70455	167 bp downstream
Tssr70456	transcription start site region 70456	203 bp downstream
Tssr70457	transcription start site region 70457	279 bp downstream
Tssr70458	transcription start site region 70458	509 bp downstream