rs218467374 SNP Detail

Summary

• ID
  rs218467374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAGAAA AAAAAAAAAA
  ACCACTGCAG CACTGCATAG CTGGAAGGGG TGGGGCTGAC ATCTCCTTAG TCCTCCCACC
  CCTCAGCCAA GCCCCACCAC AGGGCTAGTG TTCACACTAG GTGCCATGCA TTGGATCAGC
  GGAGCAGGGC GTTTGCTCAC CTCTCCCTTC TGTCCGGCTC CACAGCGGCC CTTCGGAGTG
  R
  TGTATGAGAT GGAAGTTGAC ACACTGGAGA CCACTTGCCA TGCTTTGGAC CCCACCCCGC
  TGGCAAACTG TTCTGTGAGG CAGCTGACTG AGCACGTGAG TGCTGCCTTG TGGTTGGTTG
  GTGGGTGGGT GGGTGGGTGG GAGCTGCCCA GCCACCACAG TTCAGCAAAG TGCAGGTTTG
  GCTTTCTCCA TCTCCCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628340	MGP_WTSI_16_22894413	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218467374					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628340	MGP_WTSI_16_22894413	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713090 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Tssr4818	transcription start site region 4818	1516 bp downstream
Tssr4819	transcription start site region 4819	991 bp upstream
Tssr4820	transcription start site region 4820	1607 bp upstream
Tssr137558	transcription start site region 137558	1759 bp downstream
Tssr137559	transcription start site region 137559	1563 bp downstream
Tssr137560	transcription start site region 137560	1520 bp downstream
Tssr137561	transcription start site region 137561	1495 bp downstream
Tssr137562	transcription start site region 137562	1169 bp downstream
Tssr137563	transcription start site region 137563	99 bp downstream
Tssr137564	transcription start site region 137564	69 bp downstream
Tssr137565	transcription start site region 137565	within coordinates
Tssr137566	transcription start site region 137566	72 bp upstream
Tssr137567	transcription start site region 137567	437 bp upstream
Tssr137568	transcription start site region 137568	456 bp upstream
Tssr137569	transcription start site region 137569	487 bp upstream
Tssr137570	transcription start site region 137570	502 bp upstream
Tssr137571	transcription start site region 137571	836 bp upstream
Tssr137572	transcription start site region 137572	859 bp upstream
Tssr137573	transcription start site region 137573	953 bp upstream
Tssr137574	transcription start site region 137574	974 bp upstream
Tssr137575	transcription start site region 137575	980 bp upstream
Tssr137576	transcription start site region 137576	1660 bp upstream
Tssr140504	transcription start site region 140504	10 bp downstream
Tssr140505	transcription start site region 140505	83 bp downstream
Tssr140506	transcription start site region 140506	490 bp downstream
Tssr140507	transcription start site region 140507	873 bp downstream
Tssr140508	transcription start site region 140508	917 bp downstream
Tssr140509	transcription start site region 140509	936 bp downstream
Tssr140510	transcription start site region 140510	951 bp downstream
Tssr140511	transcription start site region 140511	994 bp downstream