rs218477294 SNP Detail

Summary

• ID
  rs218477294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTACTCAG ATCCAACTCA GACTGCTTAG
  GGAAGGCCGC ACAGGGTGTG TTCTTTCTAA GTATTGCTCT CTGCAGGAGA CACTGAGAAC
  TAAGGAAGGA ACCTCTTCAG GTGAAGGGTG AAGGCTGTGG GATAAGGTTC TGAACTGTTC
  Y
  CGCCCCCCCC CACTAATGTC AGATGGCTAC ACCTCTGTAG TTCAAGTAAG GATGGACAAC
  CCCCCCCCCC CCAGCTAGCT TTGGTAATCA AATGATTCTG CCTGGTGAAA GATGCCTTGG
  CTGCAGCTTA GCTGGGCTGA GCAGCCCCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548192	CHEV_2_147005852	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218477294					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	1617 bp distal
Cpgi12377	CpG island 12377	1022 bp distal
Cpgi12378	CpG island 12378	701 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	174 bp proximal