rs218485353 SNP Detail

Summary

• ID
  rs218485353
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25015511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTCTGC GAGAATGAAC
  TCTGGAAGAG ACGTTTGTGA GAGGACAAGG GTGTGGAAGG TCAAGTCTGC AAGCCCGGCC
  GCTGTCGCGT CGTGCTCGGG AGAAAGGATC GCGCGCCCCG GTCGCCCTGG TCCTAGATGA
  TCACGGGTTA CCTTCACTCT TTAGCGCCCC AGCGCGCACG CGCAACCTTC AGGCCTCCTC
  S
  GCCCCTCCTT CCCCTCCCCT CCCCCTCCCC CTCCCCATCT GCGCCTCGCT GGCCGCGGAC
  GGGGACCAGA GAGGGCGGTC TTCTTGCCGG AAGGTTGACG CGGACGCGCT TGCACGCTGC
  GCGCCTGCGC AGGTTCCGGC GTTCGCGATC AGTCGCGCGG GAAGCAGCGT GAAGAGCGGG
  TGTTTTGAGG GGACCCTGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324298732	CHEV_13_24923397	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218485353					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25015511 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	39 bp upstream
Cpgi5387	CpG island 5387	within coordinates
Rr281160	regulatory region 281160	within coordinates
Rr403682	regulatory region 403682	within coordinates
Tdp2	tyrosyl-DNA phosphodiesterase 2	151 bp upstream
Tssr118970	transcription start site region 118970	133 bp upstream
Tssr118971	transcription start site region 118971	172 bp upstream
Tssr121812	transcription start site region 121812	195 bp upstream
Tssr121813	transcription start site region 121813	180 bp upstream
Tssr121814	transcription start site region 121814	120 bp upstream
Tssr121815	transcription start site region 121815	10 bp upstream
Tssr121816	transcription start site region 121816	60 bp downstream