rs218493534 SNP Detail

Summary

• ID
  rs218493534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATTGTA CTTTACCCTC
  TTTTTACAGT AGATCTGACA CAGGCATTAA ATAACTGCAG AAGGAGACCA CTGGGAAGAT
  GAAGGGGCAG GAAGACCTGG ATACCCAAAG GGAAGAGACA CAGATCCAGC GGGAGGAAAG
  AGGGAAGGAG CCACTTGAGG GTGGGACGTG GGGGCTGCGG TGAAGAGGAG ATTGGAAAGG
  R
  TTAAAGAGAA GCAGAGAGAC TAGAGGAATA TGCTGCTCTG ATGGACGAAA ACTTGGAGCA
  GGGGGCTCTT TCGCAACATT CTAGGGATGT CATAGGGTTG TTTGTTTGTT TGTTTGTTTT
  TTAAAGGCAA AAGAGTTTGA AGGAGGCGGA GCAAAGAAAC TCAGAGCTGA GCTGGAGGAG
  GGTGTCTGAC GCTTTCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787288	MGP_WTSI_11_69413469	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218493534					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787288	MGP_WTSI_11_69413469	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			mRNA-UTR
				Noncoding-Transcript-Variant
Gm72066	predicted gene, 72066			within coordinates
Rr386229	regulatory region 386229			within coordinates
Rr450033	regulatory region 450033			228 bp distal
Rr450034	regulatory region 450034			357 bp distal
Rr450035	regulatory region 450035			74 bp proximal
Tssr3544	transcription start site region 3544			728 bp downstream
Tssr102487	transcription start site region 102487			46 bp upstream
Tssr102488	transcription start site region 102488			1196 bp upstream
Tssr102489	transcription start site region 102489			1271 bp upstream
Tssr108712	transcription start site region 108712			40 bp downstream
Tssr108713	transcription start site region 108713			185 bp downstream
Tssr108714	transcription start site region 108714			267 bp downstream
Tssr108715	transcription start site region 108715			280 bp downstream
Tssr108716	transcription start site region 108716			592 bp downstream
Tssr108717	transcription start site region 108717			617 bp downstream
Tssr108718	transcription start site region 108718			676 bp downstream
Tssr108719	transcription start site region 108719			687 bp downstream
Tssr108720	transcription start site region 108720			691 bp downstream
Tssr108721	transcription start site region 108721			705 bp downstream
Tssr108722	transcription start site region 108722			786 bp downstream
Tssr108723	transcription start site region 108723			814 bp downstream
Tssr108724	transcription start site region 108724			867 bp downstream
Tssr108725	transcription start site region 108725			891 bp downstream
Tssr108726	transcription start site region 108726			986 bp downstream
Tssr108727	transcription start site region 108727			1008 bp downstream
Tssr108728	transcription start site region 108728			1052 bp downstream
Tssr108729	transcription start site region 108729			1139 bp downstream
Tssr108730	transcription start site region 108730			1171 bp downstream
Tssr108731	transcription start site region 108731			1202 bp downstream
Tssr108732	transcription start site region 108732			1263 bp downstream