rs218508287 SNP Detail

Summary

• ID
  rs218508287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAGTTGA CTCTTAGACA CTGGTTTGAG GGATGAGCAG
  GTCTTTGTCA GGTAGGTAAA AGACCCACAG GTCGGGCAGG TTTACACCTG GCTTGGTGGT
  R
  TAGAGATAAT TTTTTTAATG CCAAAAAGAA ACAAGGAGAA CTTGCAGCTT GTGACGTTGA
  CTTTGGCCCT GAGAAAAGCA GAATCAGTCA GAGGGGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320196697	CHEV_1_193802728	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218508287					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710808 () rs orientation: forward

Symbol	Name	Function Class
Gm70534	predicted gene, 70534	663 bp upstream
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	1464 bp distal
Rr426277	regulatory region 426277	1282 bp distal
Rr426278	regulatory region 426278	440 bp proximal
Tssr10797	transcription start site region 10797	1458 bp downstream
Tssr10798	transcription start site region 10798	1447 bp downstream
Tssr10799	transcription start site region 10799	1402 bp downstream
Tssr10800	transcription start site region 10800	588 bp downstream
Tssr10801	transcription start site region 10801	556 bp downstream