rs218515542 SNP Detail

Summary

• ID
  rs218515542
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51182567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT CAGGCAGAGA AAAGAAACCT
  W
  TCACTTGTGA AGTTAAGTCC TCTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762235	CHEV_3_51079068	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218515542					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51182567 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	1613 bp upstream
Cpgi13132	CpG island 13132	731 bp proximal
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	1118 bp upstream
Rr397655	regulatory region 397655	897 bp upstream
Rr576259	regulatory region 576259	628 bp proximal
Rr576260	regulatory region 576260	1129 bp proximal
Tssr29048	transcription start site region 29048	1111 bp upstream
Tssr29049	transcription start site region 29049	1701 bp upstream
Tssr33194	transcription start site region 33194	880 bp downstream