rs218520254 SNP Detail

Summary

• ID
  rs218520254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65367669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCCTAA AACATTAGGA
  TCTTGCTTTA GGAACCTTAC AAATTTTCAA ACAAGATTGA CAGGTCACTC AATATTATTA
  TGCATTATTT CAGAGCAAAG CTGTAAGCTA ACTGAAAGGT GTTGTGGCAT CTGCCACATC
  TCTCGTAAGA ACAGTGACTA GACTGTGCCT GACAGAAGAG GGCAAACCAG CGCTGAGTAT
  R
  CCCCCTCAAC ATCAGCACAA AGCCATAAAA GGAGACAAGG CTTTGAAAGG AGGTCAGAGG
  ACAGCGTCTA TACAAAAGGT AAAAACAATT TTGCTGAGAA AGCATATGCA GTTGGGAGGC
  TGAAGGGGAA TGGGACATGG GAGGCAGAGA CTAAGGGAGG GTGATGATCC AAATTCTTTA
  TATAGGTATC AAAATGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377865456	MGP_WTSI_9_65308194	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218520254					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377865456	MGP_WTSI_9_65308194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65367669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	296 bp proximal
Gm47270	predicted gene, 47270	within coordinates
Rr401463	regulatory region 401463	360 bp upstream
Rr681488	regulatory region 681488	70 bp proximal
Rr681489	regulatory region 681489	577 bp proximal
Rr681490	regulatory region 681490	1868 bp proximal
Spg21	SPG21, maspardin	560 bp upstream
Tssr2916	transcription start site region 2916	525 bp upstream
Tssr85703	transcription start site region 85703	539 bp upstream
Tssr85704	transcription start site region 85704	597 bp upstream
Tssr85705	transcription start site region 85705	934 bp upstream