rs218525403 SNP Detail

Summary

• ID
  rs218525403
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26310989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTATCCT ACACTTGTGA
  CTGAGTGCTG TATTCATGAC CCTCCTCCCG TTTTGAGACA AGGTCTCAAG TATCTCAAGA
  TGCTCCTGAA CTCTTGTTAC CAAGGAAGAT CTTGACCTTG AACTTCTGAT CTGATCCTCT
  TGTCTCTAGA ATTAAAAGCT TGTGCCACTG TGCCAAGTTT ATGTGGCTCT GGGGATCAAA
  M
  TCCCAGTTCC ATTAGTGCTA GGAAAACATT CTATACTTCC TGCCCCATTT TGAATCTTTA
  GTGCTGGAAT TTCCCCCTAA TATACTTTAA AGCAAGCACA TTTTGCTGTT AAATGTTACA
  GTGGTACTGG GGAATTGAAC CCAGGATCTT AAGCATGCTA AATAAAAGCT TTACTCCCAA
  CTCTGTAATT TCAAAATATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390595259	MGP_WTSI_14_27409320	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218525403					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390595259	MGP_WTSI_14_27409320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26310989 () rs orientation: forward

Symbol	Name	Function Class
Dennd6a	DENN domain containing 6A	within coordinates
Gm62986	predicted gene, 62986	within coordinates
Rr287848	regulatory region 287848	1612 bp proximal
Rr298616	regulatory region 298616	412 bp proximal
Rr298617	regulatory region 298617	1012 bp proximal
Rr298618	regulatory region 298618	1553 bp proximal
Tssr124682	transcription start site region 124682	304 bp upstream
Tssr124683	transcription start site region 124683	708 bp upstream
Tssr127790	transcription start site region 127790	1733 bp downstream
Tssr127791	transcription start site region 127791	1788 bp downstream
Tssr127792	transcription start site region 127792	1805 bp downstream
Tssr127793	transcription start site region 127793	1834 bp downstream