rs218532742 SNP Detail

Summary

• ID
  rs218532742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99756927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTGTC CAAAGGGGGT
  ACAGTCGAGA CTTGCTTTGG GAGAGTCGGG AGAGGGGAAG AAGATGTGTA GCTTTCTAAA
  TGTTTGCAAA TTTCTGGCAC CAGTCTGTGC CTTGGGTCCA GGATGATGGC CCTTCCCTTC
  CCCCCTGGAA GAGAGAGGCA GAGTCTGGGG TGGGCAAGGG GCAGCGGCAG GCCTGACCCA
  K
  AGGCATCTGC GGGCCAGACT AGGTGCAAAG GAAAGGATTC AGATCTCTGC TTCCACGCTA
  CCCATCAGGT CCGGGCCAAG CTTGGGGTTA CATGGCCGTA GCGTGGGCTG ACGAATAAGG
  GTCTATGCCA GTCTTGGTCA TGCCTGGGAA GAGGATGTAG GCGACAGGGG GCTGCAGGGT
  GGAGGCAGAC CAGGCGGTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137446	CHEV_9_99775293	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218532742					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99756927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	within coordinates
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	844 bp upstream
Rr685461	regulatory region 685461	1693 bp distal
Rr685462	regulatory region 685462	732 bp distal
Rr685463	regulatory region 685463	354 bp proximal
Rr685464	regulatory region 685464	855 bp proximal
Rr685465	regulatory region 685465	1286 bp proximal
Sox14	SRY (sex determining region Y)-box 14	within coordinates
Tssr91083	transcription start site region 91083	1273 bp downstream
Tssr91084	transcription start site region 91084	1324 bp downstream