rs218539901 SNP Detail

Summary

• ID
  rs218539901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83301015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCAGCC CCCACACCTG
  CCACCGATCG GGTCACTGGG AGCCCGGCAT CCGCCGGCGC CCCCACCCCC ACGCGGACGT
  GGTAGGGACT CACCACCCGA GGACGTACGG CCCGGCCTTT AGGATCCTCA GAACCCCCGA
  CCTTCCCAGT GTGAGGTAGA GACCCAAGAT GTCCAGGCCG GGGAAGGGAC TAAAAAGAGA
  M
  TGTGGCCCGA GTGTGTGACC CCTGCCTCTT GCCGGGAGCT GTCTGCAGAC TCACTGCAGA
  ATGCAGGCCC TGGGGAAGCT CAGGGGGCCT GGGCCCTGCT TCCTGGGACA GACCTTTCAC
  CCCCACATAA CTAGGCATGT GGGCTTAGTA AACTGCTTAG ACCCAGGACT TGTGCCTGGG
  AAGAACTGAA GGGGCATCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384069014	MGP_WTSI_11_83223691	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218539901					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384069014	MGP_WTSI_11_83223691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83301015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	within coordinates
D11Bhm144	DNA segment, Chr 11, Boehm 144	1481 bp proximal
Gm72478	predicted gene, 72478	within coordinates
Rasl10b	RAS-like, family 10, member B	within coordinates
Rr452947	regulatory region 452947	1042 bp distal
Rr452948	regulatory region 452948	107 bp distal
Rr452949	regulatory region 452949	within coordinates
Rr452950	regulatory region 452950	29 bp proximal
Tssr103692	transcription start site region 103692	900 bp downstream
Tssr103693	transcription start site region 103693	471 bp downstream
Tssr103694	transcription start site region 103694	462 bp downstream
Tssr103695	transcription start site region 103695	440 bp downstream