rs218545891 SNP Detail

Summary

• ID
  rs218545891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGAACAC CTACCCCACT
  TCTCCAAATG TTTTCTTAAC TGTCTGTTAA CAGGTAAAGA ATATAGAAAT TGCTGTTTTT
  CTAAACCAAG GTACATATGT TATAAAAATA TATAACCAAT CACCTGTCCT GCTCTAGTTA
  ACTACATGCA GCTGATCAGC TCCTTTGTCC CCTTATCACT CTGAGCTCCA GACCTAAAGT
  Y
  CAGGAGAATG AATTAAGGAC CTTGAAGTCA GGTCCCTTGG ATTCACCCAG TCTCCAGCGG
  GTACTCCCTT GCTTAAGCCA AAATGTCAAC CAAAATACAA TTGGATAACA CTGCAGCTCA
  CCCCAGCTCA CCCCAGCTCA CTTCTCACTT TGTGTTCCCA TCCTTTTAAA ATGTTGTACA
  GTATCCTTCC TGGGACATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104735	CHEV_12_77354742	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218545891					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1132 bp proximal
Gm47525	predicted gene, 47525	420 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1543 bp upstream
Rr403350	regulatory region 403350	1290 bp upstream
Rr468112	regulatory region 468112	1053 bp proximal
Rr468113	regulatory region 468113	1972 bp proximal
Tssr113934	transcription start site region 113934	1454 bp upstream
Tssr113935	transcription start site region 113935	1489 bp upstream
Tssr113936	transcription start site region 113936	1535 bp upstream
Tssr113937	transcription start site region 113937	1577 bp upstream
Tssr113938	transcription start site region 113938	1593 bp upstream
Tssr113939	transcription start site region 113939	1616 bp upstream
Tssr113940	transcription start site region 113940	1698 bp upstream
Tssr113941	transcription start site region 113941	1728 bp upstream
Tssr116711	transcription start site region 116711	1291 bp downstream
Tssr116712	transcription start site region 116712	1317 bp downstream