rs218545987 SNP Detail

Summary

• ID
  rs218545987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TACACCCCCA TTATACCCCC
  R
  CTATGCCCCT CCTGCCATGC CCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ
ss919095182	MGP_WTSI_7_142579720	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ
rs218545987					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919095182	MGP_WTSI_7_142579720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	592 bp proximal
Gm56421	predicted gene, 56421	1802 bp downstream
H19	H19, imprinted maternally expressed transcript	1574 bp upstream
Rr27	regulatory region 27	428 bp proximal
Rr370601	regulatory region 370601	528 bp upstream
Rr658231	regulatory region 658231	1085 bp distal
Rr658232	regulatory region 658232	440 bp distal
Rr658233	regulatory region 658233	150 bp proximal
Rr658234	regulatory region 658234	490 bp proximal
Rr658235	regulatory region 658235	586 bp proximal
Rr658236	regulatory region 658236	1991 bp proximal
Tssr2461	transcription start site region 2461	1794 bp downstream
Tssr70223	transcription start site region 70223	1924 bp downstream
Tssr70224	transcription start site region 70224	1879 bp downstream
Tssr70225	transcription start site region 70225	1841 bp downstream
Tssr70226	transcription start site region 70226	1746 bp downstream
Tssr70227	transcription start site region 70227	1664 bp downstream
Tssr70228	transcription start site region 70228	1651 bp downstream
Tssr75834	transcription start site region 75834	1877 bp upstream
Tssr75835	transcription start site region 75835	1845 bp upstream
Tssr75836	transcription start site region 75836	1823 bp upstream
Tssr75837	transcription start site region 75837	1800 bp upstream
Tssr75838	transcription start site region 75838	1730 bp upstream
Tssr75839	transcription start site region 75839	1708 bp upstream
Tssr75840	transcription start site region 75840	1679 bp upstream
Tssr75841	transcription start site region 75841	1652 bp upstream
Tssr75842	transcription start site region 75842	1635 bp upstream
Tssr75843	transcription start site region 75843	1629 bp upstream
Tssr75844	transcription start site region 75844	1599 bp upstream
Tssr75845	transcription start site region 75845	1566 bp upstream