rs218548685 SNP Detail

Summary

• ID
  rs218548685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53216745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aggtggagt agcactgagt caaagccagc
  ctgatctaaa gagcaaactg caggccagcc tcagctgtgt agggagaccc tgtctccgaa
  aagaaaaaaa ACCAACCAAC TCAATAACTA CCCATTCAGT GGTGTAAGCG ATGTAAgggg
  Y
  ggagaccagt tacttgaaca tgaatttgag tccagcctgg gcaacataat aagacttcat
  cttaaaacCC TCCAGTAATG TCATACCCAC TCTGCATGGC TGTGTGACAT GCATGTCATG
  TTGTATTTCT CAGACCTATC AAAAGTCATA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672290	CHEV_11_53139420	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218548685					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53216745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	990 bp distal
Gm74485	predicted gene, 74485	1273 bp upstream
Rr447001	regulatory region 447001	1284 bp distal
Rr447002	regulatory region 447002	1229 bp distal
Rr447003	regulatory region 447003	791 bp distal
Tssr101382	transcription start site region 101382	1214 bp downstream
Tssr107917	transcription start site region 107917	1306 bp upstream
Zcchc10	zinc finger, CCHC domain containing 10	within coordinates