rs218561263 SNP Detail

Summary

• ID
  rs218561263
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46045935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGCCCG GGAAGGTCAG
  GAGCTGCCGT CTTTGGAGGT AAGTCAGCCG GGTGAAGGTC CTGTGCAGAT GCCCAGGGCT
  AGAGAAGCAA CCACCAGAGG ATAATCCAGA AGCCACCAGT CCTTGGGGAC ACTCGTAGCC
  TCCCTCACCC AGGATGTCCC TCCTCTGCCT TCCAAGTGCT CCACCCTTCA CTGGTCTCAG
  S
  ACTAGCCCAG CCCAGTCCAT CCCAGGCCCC ACCCTGACCC CACGTGTGGG ACGTGAGGGG
  AAGGATACCT GGCATCAGAG GTAGGGCGAT GGGTTGTGAC CTAAGTCTCA CCTCTGGACA
  AGCTGGCCTG TCTTGGTCAG GCAAGCTCAT GCCAAGATGT GACTCAGGGC CAGGGCCTAA
  TTCTATCTTG AGTTCTGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398306193	MGP_WTSI_17_45871958	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	G	G	G	C	C	G	C	G	G	G	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218561263					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	G	G	G	C	C	G	C	G	G	G	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398306193	MGP_WTSI_17_45871958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46045935 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	1165 bp upstream
Cpgi9207	CpG island 9207	718 bp distal
Cpgi9208	CpG island 9208	1329 bp proximal
F630040K05Rik	RIKEN cDNA F630040K05 gene	within coordinates
Rr339882	regulatory region 339882	within coordinates
Rr392669	regulatory region 392669	697 bp upstream
Tssr144810	transcription start site region 144810	379 bp downstream
Tssr148277	transcription start site region 148277	1161 bp upstream