rs218561549 SNP Detail

Summary

• ID
  rs218561549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATTTCC TTCATATTAT
  GCAGCCACCA GCTTTTATTT CTGTAAAAGT TGCCATGTTT GCAAGAGCTG CTTCTTATAC
  ACATCCTCTT GGTTATTAAA TGCCAACCAC ATTTGTTTAC AAATAAAACC AAGTTAATGA
  AATACTGCAT CTACATTAGC AAGAGCTGAG AGCACTGCGG CCTCCGCAGG CTCCAGAGCC
  Y
  TGTGCTGGCC TTCAGTGGTG TACCTCAGGG AGGGTCCCCA CAGAGCATTG CAGTTAGAAA
  GGGGACCATC TCCAGCAGCT CACTTCCCAG CCCTGACCTA CTTGGGATTC TTGCAACACC
  TGGAAAATAC TGAAACATAT GGCAGTTTCC AGCAAGGAGC AAAAGGAAGG TTGTCACTGT
  CACAGCCCCC TTCCAAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494110	CHEV_8_11839902	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218561549					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889902 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1329 bp proximal
Tex29	testis expressed 29	586 bp upstream
Tssr76253	transcription start site region 76253	599 bp upstream
Tssr76254	transcription start site region 76254	612 bp upstream
Tssr76255	transcription start site region 76255	666 bp upstream