rs218563359 SNP Detail

Summary

• ID
  rs218563359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4644235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATAACG AACAGGAACA
  TTTTGGATAG ACCCAGCTAC TTTACAATAG GAATTCAAGT TGACACAGAA ATTACTGCCG
  TACTCCGTGC TTCTTGTCTG TTTCACGGCG TTTCCTACTT CCTCAGGGGA CGCAAGGTGT
  CACTTGGAAT TTTGTGTTGT TAGCTTAGTT TAGGTAGTAC AGACTGGAGG CCAAACTAGG
  Y
  GCTTAAGCCT TTGAGAAATT GCTAACTTCC CTTTCACGGT TTGCTGTATT GTCATCCAGT
  GCTAAAACCT AAAAGCAATC TAGAAACATG GCCTACAACA TTTATACAAG TTGATGGGAG
  GCCTGCAAAA TTCAGTTATG TGCTTGCCAT TACGTTGGCG GTTATTCTTA TGACTGGTGT
  GCTGCTGCTG TTCCAAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874153	CHEV_12_4601041	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218563359					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4644235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	311 bp distal
Gm3625	predicted gene 3625	504 bp upstream
Gm48678	predicted gene, 48678	1105 bp downstream
Itsn2	intersectin 2	within coordinates
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	403 bp downstream
Tssr112557	transcription start site region 112557	1587 bp downstream
Tssr112558	transcription start site region 112558	1562 bp downstream
Tssr112559	transcription start site region 112559	1399 bp downstream
Tssr112560	transcription start site region 112560	1290 bp downstream
Tssr112561	transcription start site region 112561	1148 bp downstream
Tssr112562	transcription start site region 112562	1088 bp downstream
Tssr112563	transcription start site region 112563	371 bp downstream
Tssr115637	transcription start site region 115637	1711 bp upstream
Tssr115638	transcription start site region 115638	540 bp upstream
Tssr115639	transcription start site region 115639	499 bp upstream
Tssr115640	transcription start site region 115640	482 bp upstream
Tssr115641	transcription start site region 115641	445 bp upstream
Tssr115642	transcription start site region 115642	423 bp upstream
Tssr115643	transcription start site region 115643	918 bp downstream