rs218563909 SNP Detail

Summary

• ID
  rs218563909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4919123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGT GCTCTTACCA ACTGAGCCAT
  M
  TCACCAGCCC GAGAAGGACA TCTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325716158	CHEV_19_4869095	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218563909					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4919123 () rs orientation: forward

Symbol	Name	Function Class
Actn3	actinin alpha 3	within coordinates
Cpgi10415	CpG island 10415	1066 bp distal
Tssr154367	transcription start site region 154367	291 bp upstream
Tssr154368	transcription start site region 154368	304 bp upstream
Tssr154369	transcription start site region 154369	1981 bp upstream
Tssr157520	transcription start site region 157520	1097 bp upstream
Tssr157521	transcription start site region 157521	1060 bp upstream
Tssr157522	transcription start site region 157522	310 bp downstream