rs218567320 SNP Detail

Summary

• ID
  rs218567320
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCCCACG CTTCTGCTCT GAGGTCCCTC
  TTAGCTGCTG GGCTGAGCCT GCTTTTGGGC TTCAACCCTG GGAGGATAGC AGGTTTTAGT
  TATGGAAGGC TGGGTTCAGT AGTAGCGAAC TTGTCTCTAT GTCAAGGCTG TGGATTGATC
  S
  TCCCTGCTGT TACTAGAATT GCGAGCCAGA CCCTGGGCTC TGAGAATCTA ATAAACCAGG
  TTAGTCACCA TCCTTAATAA GTCGATTAAA CAAGTAATGG TAAGATATAG AAAAAGGAGA
  TTTATTCAAT ACGGCCACAT TGGGAAGAGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104752	CHEV_12_77355447	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218567320					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	427 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	mRNA-UTR
Rr403350	regulatory region 403350	585 bp upstream
Rr468112	regulatory region 468112	348 bp proximal
Rr468113	regulatory region 468113	1267 bp proximal
Tssr113934	transcription start site region 113934	749 bp upstream
Tssr113935	transcription start site region 113935	784 bp upstream
Tssr113936	transcription start site region 113936	830 bp upstream
Tssr113937	transcription start site region 113937	872 bp upstream
Tssr113938	transcription start site region 113938	888 bp upstream
Tssr113939	transcription start site region 113939	911 bp upstream
Tssr113940	transcription start site region 113940	993 bp upstream
Tssr113941	transcription start site region 113941	1023 bp upstream
Tssr116711	transcription start site region 116711	586 bp downstream
Tssr116712	transcription start site region 116712	612 bp downstream