rs218584613 SNP Detail

Summary

• ID
  rs218584613
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43634674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTCTGG CACATAGGTC
  CTGTTCTCAA TTCTCTGACT GAAGCAGTTT AGGAGAAAAG AGGATTTATG TGGCTTATAC
  CTGGAGTTCA CGTCCACCAT CGAGAGACGT CAGGGCAGGA ACTAAAGCAG GAACCTGAAC
  CAAAACCCAC AGAGGGATGC TGCTTACCAC TCTCCCCCCC CCCCGTCCCC CACCCCCCCT
  C
  CCCCCGCGCC TTGCTCACTA GCTTTCTCAT ATAGCCCAGG CCCATCTGCC CAGGGATGGT
  GCATTGTGGT GCCGTGAATT GTGGGCTGGG CCATCCTTGG CGCTTTGGCT CTCCCTGTGT
  ATTTTGTCCC ATGCATCTTT ATTGCTGGAT ATTTGATCAT GTTGTGAACC CCAAGATTTT
  GAACTGGAAA AAACCTTGTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss380199164	MGP_WTSI_10_43478484	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs218584613					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380199164	MGP_WTSI_10_43478484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43634674 () rs orientation: forward

Symbol	Name	Function Class
1700027J07Rik	RIKEN cDNA 1700027J07 gene	within coordinates
Rr384598	regulatory region 384598	614 bp upstream
Rr430868	regulatory region 430868	38 bp distal