rs218594025 SNP Detail

Summary

• ID
  rs218594025
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108857269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATCTGG TCAACTGCTT
  TTTATTTTAT ATTGTGTCTG TTCCAGTCGC TGCAAAAGCA TTGGCAAAAA CAAAAACAAA
  AAGCTTGGGA AAGTTACTTG AGGTTAGTAG CCTAACATGT TCTTGCTTTT CAGTAAAAGT
  TGGCCAAACT TAAAGGTAGG CTGAGGACTA CTCCAGGGTG TGGAAGCTTA AAAAAATAAA
  M
  AATTCGCATA CAAGAGTGAG CATATTGAAA CAGATCTGGA GCGTGAAAAG CACCAATGGT
  TTGGCAGCCT ACAGGATGGA AAGATGCAAT TGTTATTTCC GGTGCTTAGT GACCCACAAG
  CACTGCATCC ATCTCGGGAT AGGGTGGGAA AAGACTTCCG GTGCTCTGCT CTTTTAAAAA
  AGAGACCCGC TGAGTCACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362793952	MGP_WTSI_4_108672677	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218594025					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362793952	MGP_WTSI_4_108672677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108857269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	226 bp proximal
Gm55125	predicted gene, 55125	1366 bp upstream
Nrdc	nardilysin convertase	583 bp upstream
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	318 bp upstream
Tssr38326	transcription start site region 38326	534 bp upstream
Tssr38327	transcription start site region 38327	737 bp upstream
Tssr38328	transcription start site region 38328	826 bp upstream
Tssr38329	transcription start site region 38329	842 bp upstream
Tssr38330	transcription start site region 38330	918 bp upstream
Tssr38331	transcription start site region 38331	982 bp upstream