rs218598102 SNP Detail

Summary

• ID
  rs218598102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110363580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGACCCA AGAACAGCCT
  GAGTAGTTTT ATACTTGTTT TCTAAGTTTA CAGAAGCCCT TTAGTGGCCC ATCTTAGTTT
  GTCTTTACTT GACAGATAAT CTTGGTACCC AGACCACCTC TGCGAAGGCT TGATGTGCTC
  TTACAGCAAA GCTCATCTCT TACTTGTAGT AGGAAACCAG CATGGCTTTG TCTTCTCCTG
  R
  GTTTTTGGCT TTGGAATAAC ACTTAAAGGT TTTTGCTTTG AGACTTGAAA AACCTCAAAA
  GGAATTTGTA TCATTCAATT AATGTAGGTT GCGTGCTTAT CATGTACAAA GTCATGTGCT
  AGCCCCCCAG GAAGGGCAAA GAGCCATGCA GTGACTTTCC AGGTTGCACA GTGAAGCTTC
  AAAGCTCTAA GGATTACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905144	MGP_WTSI_9_110437016	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218598102					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905144	MGP_WTSI_9_110437016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110363580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	1062 bp distal
Rr687132	regulatory region 687132	1905 bp distal
Rr687133	regulatory region 687133	490 bp distal
Rr687134	regulatory region 687134	1643 bp distal
Rr687135	regulatory region 687135	1414 bp distal
Rr687136	regulatory region 687136	659 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	1784 bp downstream
Tssr87392	transcription start site region 87392	1912 bp downstream
Tssr87393	transcription start site region 87393	1872 bp downstream
Tssr87394	transcription start site region 87394	1820 bp downstream
Tssr91631	transcription start site region 91631	1734 bp upstream
Tssr91632	transcription start site region 91632	1711 bp upstream
Tssr91633	transcription start site region 91633	1686 bp upstream
Tssr91634	transcription start site region 91634	1666 bp upstream
Tssr91635	transcription start site region 91635	1573 bp upstream
Tssr91636	transcription start site region 91636	1554 bp upstream