rs218600884 SNP Detail

Summary

• ID
  rs218600884
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTATTAG TTATCTTACA
  GTCTGGTCTT GGTCACCCCA GTCAACCGGA GGCACAGTAT GGTCTCCCTA TCCTACTGAA
  GTACTACTAT CAGTGATAGA ATGGGGACAG GAGAGATGCC CTGTCCCTCC AGCCACGTGC
  GTGCGTATAC CATTGCTCTT AGCTTCTGTT GAAAGTTATG CAGCTGAAAT CCACAGAGTC
  W
  GCATCCACAA ATCAGGGCAC CAGAGAGTAG AGCAGCTCTA GATGGAAGTG ACCGGAGCTC
  CAGATGGGAG GAGGACTCAA GGGCTGACCA GTCATGACCA CTCAGCAGTG GTTCTCACCT
  ATGTGAGGTG CAATAGCACC TTGGCAGATC CTCAGCCTAG TGGCTGCATG TCAGCTGAGT
  ACTCATTTCT GGCTCCTAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453189	MGP_WTSI_7_149764827	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218600884					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453189	MGP_WTSI_7_149764827	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1390 bp proximal
Gm56420	predicted gene, 56420	1999 bp downstream
Gm56421	predicted gene, 56421	1004 bp downstream
H19	H19, imprinted maternally expressed transcript	776 bp upstream
Mir675	microRNA 675	1775 bp upstream
Rr27	regulatory region 27	1226 bp proximal
Rr370601	regulatory region 370601	1326 bp upstream
Rr658231	regulatory region 658231	287 bp distal
Rr658232	regulatory region 658232	337 bp proximal
Rr658233	regulatory region 658233	948 bp proximal
Rr658234	regulatory region 658234	1288 bp proximal
Rr658235	regulatory region 658235	1384 bp proximal
Tssr2460	transcription start site region 2460	1662 bp downstream
Tssr2461	transcription start site region 2461	996 bp downstream
Tssr70215	transcription start site region 70215	1946 bp downstream
Tssr70216	transcription start site region 70216	1882 bp downstream
Tssr70217	transcription start site region 70217	1865 bp downstream
Tssr70218	transcription start site region 70218	1515 bp downstream
Tssr70219	transcription start site region 70219	1477 bp downstream
Tssr70220	transcription start site region 70220	1365 bp downstream
Tssr70221	transcription start site region 70221	1326 bp downstream
Tssr70222	transcription start site region 70222	1268 bp downstream
Tssr70223	transcription start site region 70223	1126 bp downstream
Tssr70224	transcription start site region 70224	1081 bp downstream
Tssr70225	transcription start site region 70225	1043 bp downstream
Tssr70226	transcription start site region 70226	948 bp downstream
Tssr70227	transcription start site region 70227	866 bp downstream
Tssr70228	transcription start site region 70228	853 bp downstream
Tssr75829	transcription start site region 75829	1544 bp upstream
Tssr75830	transcription start site region 75830	1517 bp upstream
Tssr75831	transcription start site region 75831	1496 bp upstream
Tssr75832	transcription start site region 75832	1430 bp upstream
Tssr75833	transcription start site region 75833	1353 bp upstream
Tssr75834	transcription start site region 75834	1079 bp upstream
Tssr75835	transcription start site region 75835	1047 bp upstream
Tssr75836	transcription start site region 75836	1025 bp upstream
Tssr75837	transcription start site region 75837	1002 bp upstream
Tssr75838	transcription start site region 75838	932 bp upstream
Tssr75839	transcription start site region 75839	910 bp upstream
Tssr75840	transcription start site region 75840	881 bp upstream
Tssr75841	transcription start site region 75841	854 bp upstream
Tssr75842	transcription start site region 75842	837 bp upstream
Tssr75843	transcription start site region 75843	831 bp upstream
Tssr75844	transcription start site region 75844	801 bp upstream
Tssr75845	transcription start site region 75845	768 bp upstream