rs218630668 SNP Detail

Summary

• ID
  rs218630668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57919449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTACTTT GTCCTGCTGG
  AGGTTGGGAC AGGTGGTCTA GGACAAACCA GTACCAAGCA GCTCATCAAC CACTGTCCAG
  GTCTTCAGAG TACTTGGCTT GGGTTCTGCA TTTGTTCTGC CTGGTTTTTC ATCCAAGTCT
  TGGTAAGAGA ACCCAAACCT AGAGTTTTTG TTTGTTTGTT TTCCTTTTTC TTCATCCCCC
  Y
  CCTCCCTGAG ACAGGGTTTC TCTGTGTAGC CTTGGCTGTC CTGGAACTCA CTCTGTACAC
  CAGGTTGGCC TTGAACTCAG AAATCAGCCT GCCTCTGCCT CTCAGGTGCT GGGATTAAAG
  GTGTGCGCCA CCACTGCCCG GCCCAAGCCT AGAGTTTTAA GTCTTGTTTT AGGGCAGAGT
  GATCCTTGGA TGGAGACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm
ss383510936	MGP_WTSI_11_57842125	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm
rs218630668					SNP	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383510936	MGP_WTSI_11_57842125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57919449 () rs orientation: forward

Symbol	Name	Function Class
Gm51897	predicted gene, 51897	within coordinates
Larp1	La ribonucleoprotein 1, translational regulator	within coordinates
Rr386121	regulatory region 386121	92 bp upstream