rs218631914 SNP Detail

Summary

• ID
  rs218631914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66964283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTGTTA GTAGGTAAAA
  GGGCACAATA GTACCTAAAA TATTTTTCCT AAGGCATGAT ATATGGTTAG GAGAACATCT
  ACCCCAGTTT GAACTTCTGC CTCAAGGAGA TGTAAAGCAA CATTTAATTA TTTTTAATAA
  TGTTGAGCCT GAAAGTGAAA AAGTAAACAT CAAAATTCCT GAGGCTGGGG GCTGGGACAT
  Y
  GGGACACTGC AAAACAAAGC GGTTGTGTGT GCGCACGCGC GCGCGGCTTA AGACCAGGGG
  CGCATGCGCA GACTTTCCTC AACGGTCGCC TGGCAGGTTA AAGGTCACTG AGGAAGCTGA
  GCTTCTTGCT CTTCGTACGG CAGCCGAGCT GCCTGCAGCC ATGGCCTTGG CCAGAGATGC
  CAAGCTGGAG TCGGACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss375019457	MGP_WTSI_8_69035530	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs218631914					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375019457	MGP_WTSI_8_69035530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66964283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	within coordinates
Gm63911	predicted gene, 63911	609 bp upstream
Tktl2	transketolase-like 2	125 bp upstream
Tssr77575	transcription start site region 77575	101 bp upstream
Tssr77576	transcription start site region 77576	120 bp upstream