rs218634605 SNP Detail

Summary

• ID
  rs218634605
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6339050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCAGTCCC TGTCTCTAAA GACACACGGG
  TCCGCCATGA AAGACTCGAA GGTTCCAGAT GGCCCTGGCC AGTGTTCGGT CACGAACTGA
  CTAGACGAGC AGGCTTTGGc caggcccagg cccaggccct gcctgccctg ccgtggcccc
  S
  cccccgccat agtcccaccc ccagtcggcc ccgccccggT GGACAGAAGC AGGAAGCGTG
  CGGGGCTCCA CCGACGCCGC GGTCGCAAAG GTGCGGAGGG GACGCAGGGT GCAGGCCGGG
  CGCACTGAAC TTCCTGCACA GCAGCCAGTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323549863	CHEV_11_6289053	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218634605					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6339050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	within coordinates
Rr246943	regulatory region 246943	within coordinates
Tssr100241	transcription start site region 100241	11 bp upstream
Tssr100242	transcription start site region 100242	35 bp upstream
Tssr100243	transcription start site region 100243	67 bp upstream
Tssr100244	transcription start site region 100244	280 bp upstream
Tssr100245	transcription start site region 100245	378 bp upstream
Tssr100246	transcription start site region 100246	392 bp upstream
Tssr100247	transcription start site region 100247	503 bp upstream
Tssr100248	transcription start site region 100248	526 bp upstream
Zmiz2	zinc finger, MIZ-type containing 2	24 bp upstream