rs218644389 SNP Detail

Summary

• ID
  rs218644389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118267630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCCATG ATATAATGAA
  CTTCGGGAAT TATTTAGGCT GTGTGTGCAG ATAGCACCCC TGTTATCATG GCAAACCTTT
  CTGAGGTGAA CTGAACTTCC TGAAAAAAAC AAAACAAAAC TGTGTCAATG CCAACACCAC
  AGAGTGACAC GAGGGATTCT CATCCACCCA AGGAAAGCAG CGCAGTGACA ATAAGCAGTC
  R
  TGAGGTAGGC AGGCCACATC TATTTTCCAG AAGAGGAACT GACAAAGAAG AGTGTGCAGA
  AACCTGAGCA CGTTCCTATT AACCCTACTG CAAATCTAAG AGAATGTTGT CTACTGGGAG
  AGGCAGTGTT TGAGAGCTGG GAGGAGGAGA GCATGGAATT AAAAAGGTGC AAGGCTAAGT
  GAGTTCGAAG CCAGTTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321283067	CHEV_4_118083038	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218644389					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118267630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	611 bp distal
Med8	mediator complex subunit 8	within coordinates
Rr398422	regulatory region 398422	972 bp downstream
Rr598388	regulatory region 598388	1171 bp distal
Rr598389	regulatory region 598389	1057 bp distal
Rr598390	regulatory region 598390	421 bp distal
Szt2	SZT2 subunit of KICSTOR complex	1160 bp upstream
Tssr1279	transcription start site region 1279	1041 bp downstream
Tssr38654	transcription start site region 38654	1059 bp downstream
Tssr38655	transcription start site region 38655	437 bp upstream
Tssr38656	transcription start site region 38656	1303 bp upstream
Tssr43049	transcription start site region 43049	1151 bp upstream