rs218645740 SNP Detail

Summary

• ID
  rs218645740
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9672003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAACA GAATTCTTGG
  AGGTATTTTC CTGCAGGTCA TAGATAGGAC CAGCTGAGAT GTTCCAGAAA GTGGGGACAT
  TTGTCATGCA AGCATGGCAA CCTGAGTTTG AACTCTGGAA AGCAGAAAGG TGAGTGTACA
  ACAGGCACTA TATAAAGTTC TTCGACTTCC CTAAGTGTTC CATGGCTCCA GCGTGCGCTC
  G
  AGCTCGCTCG CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCACACA CACACACACA
  CACACACACA CACACACACA CACACACAAA GTGATTTTAG TATTTTTTTA AAGAAAGGAT
  ATCTGCTCAC TGATAATCTG GGGGACTCTT CCCATTTTGA GTCAGAAGAG CCTCAGTTCT
  TGCTAAGAGG GGACAAAGGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356928690	MGP_WTSI_3_9606943	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs218645740					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356928690	MGP_WTSI_3_9606943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9672003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	1651 bp proximal
Gm56803	predicted gene, 56803	1820 bp upstream
Rr78141	regulatory region 78141	797 bp proximal
Tssr28346	transcription start site region 28346	1860 bp upstream
Tssr28347	transcription start site region 28347	1883 bp upstream
Zfp704	zinc finger protein 704	within coordinates