rs218645807 SNP Detail

Summary

• ID
  rs218645807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84440161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGTTGG GTAAGGTAGC
  ACATACCTTT AACTTCAGCA CTTGGAAGGC AGGGGCAGGT GTATATATGA GTTTAAGGTC
  AGCCTGATCT ACATGATTTC CAAGCCAGAC AGAGCTATGT GGTGAGACCT TGTCTCAATA
  AACAAAAGAT AAAAATAAAG GGCTAGTGAG ATGGTGCTGC TGCCCAGCCT TAATGACATG
  Y
  GTGTGCTCTT CAGGGCTCGC TGATCTCCAT TGCACAGATA CAAACACGCC AACAGAGCAG
  TGTACAAAGT AAGACATTCC CACTCGTCCC ACCATGCTCC CCACATGATG ATAAGGGACT
  GAGTCTCTGG AAATGTGAGC AAGCCCCCAA CTAGATGCTT TCTTTTATGA GTTGCCATGG
  TCATAACTAA GAGTGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384016	MGP_WTSI_8_86237431	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218645807					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384016	MGP_WTSI_8_86237431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84440161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	1378 bp proximal
Ddx39a	DEAD box helicase 39a	1645 bp upstream
Rr382392	regulatory region 382392	within coordinates
Rr401010	regulatory region 401010	1442 bp upstream
Rr666291	regulatory region 666291	995 bp proximal
Rr666292	regulatory region 666292	1155 bp proximal
Tssr78284	transcription start site region 78284	1659 bp upstream
Tssr78285	transcription start site region 78285	1695 bp upstream
Tssr78286	transcription start site region 78286	1707 bp upstream
Tssr78287	transcription start site region 78287	1773 bp upstream
Tssr78288	transcription start site region 78288	1972 bp upstream