rs218654173 SNP Detail

Summary

• ID
  rs218654173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAATATT TATAAATAGG
  TCTAAGCAAA CTGCATTATA TTTATCAACC TCTATCCACT GAGACAAAAA TTCTAACCTA
  GTTGACTTGA AAATCAAGTC AAACCTCATA CTTGTCCATG ACAAAAGATA AAAAACGGGA
  GACACAACAG AATGGAACTC TGTCTGAACA ATACAAAGAC AACTTTGACA AGTAACATTT
  Y
  GAGATGAATT CAACACAGTC TGCAGGTGAG GCTGTGCAGA ACAATCAAGA TGGGCAGTGA
  GCTGCAGAGT TTGCAGAATG AGGGCACTCT AAACTCATCA AGTGAGGAGG CCCTTCCCTC
  ACACTCCAGA TGGCTGATAG GTGGCATTAC ATGGTCAGTG TGTGTGCATG TGTGTGTGTG
  TGTGCGCGCG CGTGCGCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363808983	MGP_WTSI_4_155365320	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218654173					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363808983	MGP_WTSI_4_155365320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075668 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	265 bp proximal
Rr377473	regulatory region 377473	1006 bp upstream
Rr606627	regulatory region 606627	1813 bp distal
Rr606628	regulatory region 606628	682 bp distal
Rr606629	regulatory region 606629	130 bp proximal
Rr606630	regulatory region 606630	1363 bp proximal
Rr606631	regulatory region 606631	1428 bp proximal
Rr606632	regulatory region 606632	1439 bp proximal
Rr606633	regulatory region 606633	1681 bp proximal
Sdf4	stromal cell derived factor 4	1661 bp upstream
Tssr1404	transcription start site region 1404	1728 bp upstream
Tssr40748	transcription start site region 40748	1189 bp upstream
Tssr40749	transcription start site region 40749	1932 bp upstream
Tssr44987	transcription start site region 44987	1120 bp downstream
Tssr44988	transcription start site region 44988	1393 bp downstream