rs218663769 SNP Detail

Summary

• ID
  rs218663769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGCTGA TGCTGCACCA
  ACTGTATCCA TCTTCCCACC ATCCAGTGAG CAGTTAACAT CTGGAGGTGC CTCAGTCGTG
  TGCTTCTTGA ACAACTTCTA CCCCAAAGAC ATCAATGTCA AGTGGAAGAT TGATGGCAGT
  GAACGACAAA ATGGCGTCCT GAACAGTTGG ACTGATCAGG ACAGCAAAGA CAGCACCTAC
  R
  GCATGAGCAG CACCCTCACG TTGACCAAGG ACGAGTATGA ACGACATAAC AGCTATACCT
  GTGAGGCCAC TCACAAGACA TCAACTTCAC CCATTGTCAA GAGCTTCAAC AGGAATGAGT
  GTTAGAGACA AAGGTCCTGA GACGCCACCA CCAGCTCCCC AGCTCCATCC TATCTTCCCT
  TCTAAGGTCT TGGAGGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707612	MGP_WTSI_6_70676626	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218663769					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707612	MGP_WTSI_6_70676626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703616 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	within coordinates
Rr158	regulatory region 158	681 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1197 bp downstream
Rr399685	regulatory region 399685	785 bp downstream
Rr399686	regulatory region 399686	within coordinates
Tssr1880	transcription start site region 1880	218 bp upstream
Tssr56956	transcription start site region 56956	799 bp downstream
Tssr56957	transcription start site region 56957	160 bp downstream
Tssr56958	transcription start site region 56958	144 bp downstream
Tssr56959	transcription start site region 56959	126 bp downstream
Tssr56960	transcription start site region 56960	111 bp downstream
Tssr56961	transcription start site region 56961	95 bp downstream
Tssr56962	transcription start site region 56962	83 bp downstream
Tssr56963	transcription start site region 56963	36 bp downstream
Tssr56964	transcription start site region 56964	25 bp downstream
Tssr56965	transcription start site region 56965	13 bp downstream
Tssr56966	transcription start site region 56966	5 bp downstream
Tssr56967	transcription start site region 56967	4 bp upstream
Tssr56968	transcription start site region 56968	28 bp upstream
Tssr56969	transcription start site region 56969	64 bp upstream
Tssr56970	transcription start site region 56970	77 bp upstream
Tssr56971	transcription start site region 56971	97 bp upstream
Tssr56972	transcription start site region 56972	123 bp upstream
Tssr56973	transcription start site region 56973	161 bp upstream
Tssr56974	transcription start site region 56974	193 bp upstream
Tssr56975	transcription start site region 56975	226 bp upstream
Tssr61321	transcription start site region 61321	123 bp upstream
Tssr61322	transcription start site region 61322	15 bp downstream
Tssr61323	transcription start site region 61323	30 bp downstream
Tssr61324	transcription start site region 61324	120 bp downstream
Tssr61325	transcription start site region 61325	186 bp downstream
Tssr61326	transcription start site region 61326	221 bp downstream
Tssr61327	transcription start site region 61327	235 bp downstream
Tssr61328	transcription start site region 61328	326 bp downstream