rs218674769 SNP Detail

Summary

• ID
  rs218674769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCGAGGT ACCAGAGACA
  CAGCAAGACA GAGTGCTAAT TACTATGGTG CCAGAAACCA TCTAAGCTAC TCCTTTGTGA
  GGTCTGGTAT TTAAAGGTAA AACCAAGAGA GCACACACAG GAACCATAAC TCTAGAAACA
  TATCAAAAGA CACTTACTTG CAGTAGCTCT CATTGACCAC AACAGATACC ACCCCCAAGG
  R
  AGCAGAAAGG TTAACTGACG ATTTCGCATA GAGAAAAAAA AAAATTCAAG TGTTATTCTT
  TATTTCTATA TTTCTCAAGG GAATGCCACA TCAAATATTT AGTTGACACT TTTAATTGCT
  CAATATTTTA ATACAAATAT AGGAAATTAT ACAGAATTAA ATAACACGTG AAAAGCATAC
  CAAGTATATA AATATCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396132298	MGP_WTSI_16_45382195	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218674769					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396132298	MGP_WTSI_16_45382195	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202445 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	53 bp downstream
Tssr4884	transcription start site region 4884	608 bp downstream
Tssr4885	transcription start site region 4885	645 bp downstream
Tssr4886	transcription start site region 4886	977 bp downstream
Tssr141220	transcription start site region 141220	517 bp downstream
Tssr141221	transcription start site region 141221	540 bp downstream
Tssr141222	transcription start site region 141222	661 bp downstream
Tssr141223	transcription start site region 141223	674 bp downstream
Tssr141224	transcription start site region 141224	693 bp downstream
Tssr141225	transcription start site region 141225	717 bp downstream
Tssr141226	transcription start site region 141226	769 bp downstream
Tssr141227	transcription start site region 141227	823 bp downstream
Tssr141228	transcription start site region 141228	865 bp downstream
Tssr141229	transcription start site region 141229	881 bp downstream
Tssr141230	transcription start site region 141230	1034 bp downstream
Tssr141231	transcription start site region 141231	1128 bp downstream
Tssr141232	transcription start site region 141232	1180 bp downstream